{"id":61,"date":"2010-08-27T15:45:16","date_gmt":"2010-08-27T15:45:16","guid":{"rendered":"http:\/\/cellpathway.com\/?page_id=61"},"modified":"2026-04-08T12:39:04","modified_gmt":"2026-04-08T16:39:04","slug":"test","status":"publish","type":"page","link":"https:\/\/www.cellpathway.com\/?page_id=61","title":{"rendered":"Publication"},"content":{"rendered":"<h3 class=\"year\">2026<\/h3>\n<hr \/>\n<ul>\n<li>A. Callahan, R. Puterbaugh, T. Ro, X. Zhang, X. Su, A. Salomon (2026). &#8220;Phosphoproteomic analysis of successive Jurkat CD19-CAR generations reveals TCR\u03b6-driven signalling&#8221;. Cellular Signalling, 138:112204.<\/li>\n<li>\n<p class=\"p1\">A. Callahan, S.S. Trychanh, T. Ro, A. Mojumdar, A.R. Salomon. (2026). \u201cPhosphotyrosine proteomics reveals novel Zap70 and Itk pathway targets downstream of TCR and CAR in Jurkat T cells.\u201d <i>Sci. Rep.<\/i>, in press. doi:10.1038\/s41598-026-47234-x.<\/p>\n<\/li>\n<\/ul>\n<h3 class=\"year\">2025<\/h3>\n<hr \/>\n<ul>\n<li>\n<p class=\"p1\">A. Callahan, A. Mojumdar, A.R. Salomon, N.A. DaSilva. (2025). \u201cEvaluating first-pass, high protein capacity desalting techniques for phosphoproteomics applications.\u201d <i>bioRxiv<\/i>, 2025.06.03.657744. doi:10.1101\/2025.06.03.657744.<\/p>\n<\/li>\n<li>\n<p class=\"p1\">A. Callahan, X. Zhang, A. Wang, A. Mojumdar, L. Zeng, X. Su*, A. Salomon*. (2025). &#8220;CSF1R-CAR T cells induce CSF1R signaling and can promote target cell proliferation.&#8221; Science Signaling. 18: eadv4112.<\/p>\n<\/li>\n<li>A. Callahan, A. Mojumdar, M. Hu, A. Wang, A. Griffith, N. Huang, X. Chua, N. Mroz, R. Puterbaugh, S. Reilly, A. Salomon (2025). \u201cThe phosphatases TCPTP, PTPN22, and SHP1 play unique roles in T cell phosphotyrosine maintenance and feedback regulation of the TCR.\u201d Sci. Rep, 15:27747.<\/li>\n<li>J. Wan, P. Morse, M. Zurek 1,2, A. Turner, A. Vaishnav, A. Salomon, B. Edwards, T. Arroum, and M. H\u00fcttemann (2025). &#8220;Tyrosine 67 Phosphorylation Controls Respiration and Limits the Apoptotic Functions of Cytochrome c&#8221;. Cells. 14(3): 951.<\/li>\n<\/ul>\n<h3 class=\"year\">2024<\/h3>\n<hr \/>\n<ul>\n<li>A. Callahan, X. Chua, A. Griffith, T. Hildebrandt, G. Fu, M. Hu, R. Wen, A. Salomon* (2024). &#8220;Deep phosphotyrosine characterization of primary murine T cells using broad spectrum optimization of selective triggering&#8221;. Proteomics. 24(23-24):e2400106.<\/li>\n<\/ul>\n<h3 class=\"year\">2023<\/h3>\n<hr \/>\n<ul>\n<li>G. Fu, Y. Zheng, G. Xin, Z. Wang, K. Bunting, W. Cui, A. Salomon, R. Wen (2023). &#8220;Gab3 Plays an Essential Role in CD8 + T-Cell Expansion through Regulating IL-2-Mediated Activation of PI3K\/AKT\/mTOR and Erk\/FoxO Pathways.&#8221; Blood. 142:3931.<\/li>\n<\/ul>\n<h3 class=\"year\">2022<\/h3>\n<hr \/>\n<ul>\n<li>A. Griffith, K. Callahan, N King, Q. Xiao, X. Su, A. Salomon* (2022). &#8220;SILAC phosphoproteomics reveals unique signaling circuits in CAR-T cells and the inhibition of B cell-activating phosphorylation in target cells.&#8221; J Proteome Res. 21(2):395-409.<\/li>\n<\/ul>\n<h3 class=\"year\">2021<\/h3>\n<hr \/>\n<ul>\n<li>X. Chua, T. Aballo, W. Elnemer, M. Tran, A. Salomon* (2021). &#8220;Quantitative interactomics of Lck-TurboID in living human T cells unveils T cell receptor stimulation-induced proximal Lck interactors.&#8221; J Proteome Res. 20(1):715-726.<\/li>\n<li>X. Chua, A. Salomon* (2021). &#8220;Ovalbumin antigen-specific activation of T cell receptor closely resembles soluble antibody stimulation as revealed by BOOST phosphotyrosine proteomics.&#8221; J. Proteome Res. 20(6):3330-3344.<\/li>\n<\/ul>\n<h3 class=\"year\">2020<\/h3>\n<hr \/>\n<ul>\n<li>X. Chua, T. Mensah, T. Aballo, S. Mackintosh, R. Edmondson, A. Salomon (2020). &#8220;Tandem mass tag approach utilizing pervanadate boost channels delivers deeper quantitative characterization of the tyrosine phosphoproteome.&#8221; Molecular and Cellular Proteomics, 19(4):730-43.<\/li>\n<\/ul>\n<h3 class=\"year\">2019<\/h3>\n<hr \/>\n<ul>\n<li>M. Curtis, H. Kenny, B. Ashcroft, A. Mukherjee, A. Johnson, Y. Zhang, Y. Helou, R. Batlle, X. Liu, N. Gutierrez, X. Gao, S. Yamada, R. Lastra, A. Montag, N. Ahsan, J. Locasale, A. Salomon, A. Nebreda, E. Lengyel (2019). &#8220;<a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1550413118305084?via%3Dihub\">Fibroblasts mobilize tumor cell glycogen to promote proliferation and metastasis<\/a>.&#8221; <em>Cell Metabolism<\/em>, <strong>29<\/strong>:141-155.<\/li>\n<li>N. Ahsan, J. Boylan, A. Salomon, J. Sanders, P. Gruppuso (2019). &#8220;Quantitative proteomics and phosphoproteomics from formalin-fixed, paraffin-embedded tissue samples.&#8221;\u00a0<em>Methods Mol. Biol.<\/em> In press.<\/li>\n<\/ul>\n<h3 class=\"year\">2018<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>J. Li, B. Feng, Y. Nie, P. Jiao, X. Lin, M. Huang, R. An, Q. He, H. Zhou, A. Salomon, K. Sigrist, Z. Wu, S. Liu, H. Xu (2018). &#8220;<a href=\"https:\/\/diabetes.diabetesjournals.org\/content\/67\/3\/400.long\">Sucrose nonfermenting-related kinase regulates both adipose inflammmation and Energy Homeostasis in mice and humans<\/a>.&#8221;\u00a0<em>Diabetes<\/em>,\u00a0<strong>67<\/strong>:400-11.<\/li>\n<li>W. Lo, N. Shah, N. Ahsan, V. Horkova, O. Stepanek, A. Salomon, J. Kuriyan, A. Weiss (2018). &#8220;<a href=\"https:\/\/www.nature.com\/articles\/s41590-018-0131-1\">Lck promotes Zap70-dependent LAT phosphorylation by bridging Zap70 to LAT<\/a>.&#8221;\u00a0<em>Nat. Immun.,\u00a0<\/em><strong>19<\/strong>:733-41.<\/li>\n<li>Curtis, H. Kenny, B. Ashcroft, A. Mukherjee, A. Johnson, Y. Zhang, Y. Helou, R. Batlle, X. Liu, N. Gutierrez, X. Gao, S. Yamada, R. Lastra, A. Montag, N. Ahsan, J. Locasale, A. Salomon, A. Nebreda, E. Lengyel (2018). &#8220;Fibroblasts mobilize tumor cell glycogen to promote proliferation and metastasis.&#8221; <em>Cell Metabolism<\/em>, <strong>28<\/strong>:1-15.<\/li>\n<\/ul>\n<h3 class=\"year\">2017<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>J. Belmont, T. Gu, A. Mudd, A. Salomon (2017). &#8220;<a href=\"http:\/\/pubs.acs.org\/doi\/abs\/10.1021\/acs.jproteome.6b01026\">A PLC-g1 feedback pathway regulates Lck substrate phosphorylation at the T cell receptor and SLP-76 Complex<\/a>.&#8221;\u00a0<em>J. Proteome Res.<\/em>,\u00a0<strong>16(8)<\/strong>:2729-42.<\/li>\n<li>N. Ahsan, J. Belmont, Z. Chen, J. Clifton, A. Salomon (2017). &#8220;<a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S1874391917302233\">Highly reproducible improved label-free quantitative analysis of cellular phosphoproteome by optimization of LC-MS\/MS gradient and analytical column construction.<\/a>&#8221; <em>J. Proteomics<\/em>,\u00a0<strong>165<\/strong>:69-74.<\/li>\n<li>N. Ahsan, A. Salomon (2017). &#8220;<a href=\"https:\/\/link.springer.com\/protocol\/10.1007\/978-1-4939-6881-7_22\">Quantitative phosphoproteomic analysis of T cell receptor signaling.<\/a>&#8221;\u00a0<em>Methods in Molecular Biology, The Immune Synapse:Methods and Protocols<\/em>,\u00a0<strong>\u00a01584<\/strong>:369-382.<\/li>\n<li>A. Qadir, P. Ceppi, S. Brockway, C. Law, L Mu, N. Khodarev, J. Kim, J. Zhao, W. Putzbach, A. Murrmann, Z. Chen, W. Chen, X. Liu, A. Salomon, H. Liu, R. Weichselbaum, J. Yu, M. Peter (2017) \u201c<a href=\"http:\/\/www.cell.com\/cell-reports\/abstract\/S2211-1247(17)30235-8\">CD95\/Fas increases stemness in cancer cells by inducing STAT1 dependent Type I Interferon Response.<\/a>\u201d <em>Cell Reports<\/em>, <strong>18<\/strong>:2373-2386.<\/li>\n<li>A. Michael, N. Ahsan, V. Zabala, H. Francois-Vaughan, S. Post, K. Brilliant, A. Salomon, J. Sanders, and P. Gruppuso (2017). \u201c<a href=\"http:\/\/www.impactjournals.com\/oncotarget\/index.php?journal=oncotarget&amp;page=article&amp;op=view&amp;path[]=15219&amp;pubmed-linkout=1\">Proteomic Analysis of Laser Capture Microdissected Focal Lesions in a Rat Model of Progenitor Marker-Positive Hepatocellular Carcinoma.<\/a>\u201d <em>Oncotarget,<\/em>\u00a0<strong>8<\/strong>:26041-56.<\/li>\n<\/ul>\n<h3 class=\"year\">2016<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>N. Ahsan, R. Rao, P. Gruppuso, B. Ramratnam, A. Salomon (2016). &#8220;<a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S1874391916301403\">Targeted proteomics: Current status and future perspectives for quantification of food allergens<\/a>.&#8221;\u00a0<em>J. Proteomics<\/em>,\u00a0<strong>143<\/strong>:15-23.<\/li>\n<li>G. Mahapatra, A. Varughese, Q. Ji, I. Lee, J. Liu, A. Vaishnav, C. Sinkler, A. Kapralov, C. Moraes, T. Sanderson, T. Stemmler, L. Grossman, V. Kagan, J. Brunzelle, A. Salomon, B. Edwards, M. Huttemann (2016). &#8220;<a href=\"http:\/\/www.jbc.org\/content\/292\/1\/64.full\">Phosphorylation of cytochrome c threonine 28 regulates electron transport chain activity in kidney: Implications for AMP kinase.<\/a>&#8221; J. Biol. Chem.,\u00a0<strong>292<\/strong>(1): 64-79.<\/li>\n<\/ul>\n<h3 class=\"year\">2015<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>H. Goodfellow, M. Frushicheva, Q. Ji, D. Cheng, T. Kadlecek, A. Cantor, J. Kuriyan, A. Chakraborty*, A. Salomon*, A. Weiss* (2015). &#8220;<a href=\"http:\/\/stke.sciencemag.org\/content\/8\/377\/ra49.abstract\" target=\"_blank\" rel=\"noopener noreferrer\">The catalytic activity of the kinase ZAP-70 mediates basal signaling and negative feedback of the T cell receptor pathway.<\/a>&#8221; <em>Science Signaling<\/em>, <strong>8<\/strong>:ra49<strong>.<\/strong> (* co-corresponding authors)<\/li>\n<li>Q. Ji, Y. Ding, A. Salomon (2015). &#8220;<a href=\"http:\/\/www.mcponline.org\/content\/14\/1\/30\" target=\"_blank\" rel=\"noopener noreferrer\">SLP-76 N-terminal tyrosine residues regulate a dynamic signaling equilibrium involving feedback of proximal TCR signaling.<\/a>&#8221;\u00a0<em>Mol Cell Prot.,\u00a0<\/em><strong>14<\/strong>(1):30-40.<\/li>\n<li>Y. Helou, A. Petrashen, A. Salomon (2015). &#8220;<a href=\"http:\/\/pubs.acs.org\/doi\/full\/10.1021\/acs.jproteome.5b00340\" target=\"_blank\" rel=\"noopener noreferrer\">Vav1 regulates T cell activation through a feedback mechanism and crosstalk between the T cell receptor and CD28.<\/a>&#8221;\u00a0<em>J. Proteome Research<\/em>, <strong>14<\/strong>(7):2963-75<strong>.<\/strong><\/li>\n<li>Q. Ji, A. Salomon (2015).\u00a0&#8220;<a href=\"http:\/\/pubs.acs.org\/doi\/full\/10.1021\/pr501172u\" target=\"_blank\" rel=\"noopener noreferrer\">Wide-scale quantitative phosphoproteomic analysis reveals that cold treatment of T cells closely mimics soluble antibody stimulation.<\/a>&#8221;\u00a0<em>J. Proteome Research<\/em>,\u00a0<strong>14<\/strong>(5):2082-9.<\/li>\n<li>Y. Helou, A. Salomon (2015). &#8220;<a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0952791515000205\" target=\"_blank\" rel=\"noopener noreferrer\">Protein networks and activation of lymphocytes.<\/a>&#8221;\u00a0<em>Cur Opin Immun.<\/em>,\u00a0<strong>33<\/strong>:78-85.<\/li>\n<li>J. Boylan, A. Salomon, U. Tantravahi, P. Gruppuso (2015). &#8220;<a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0014482715001883\" target=\"_blank\" rel=\"noopener noreferrer\">Adaptation of HepG2 cells to a steady-state reduction in the content of protein phosphatase 6 (PP6) catalytic subunit<\/a>.&#8221;\u00a0<em>Exp. Cell Res.<\/em>,\u00a0<strong>335<\/strong>(2):224-37<strong>.<\/strong><\/li>\n<\/ul>\n<h3 class=\"year\">2014<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>D. Lamming, G. Demirkan, J. Boylan, M. Mihaylova, T. Peng, J. Ferreira, N. Neretti, A. Salomon, D. Sabatini, P. Gruppuso (2014). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24072782\" target=\"_blank\" rel=\"noopener noreferrer\">Hepatic signaling by the mechanistic target of rapamycin complex 2 (mTORC2).<\/a>&#8221;\u00a0<em>FASEB J.<\/em>,\u00a0<strong>28<\/strong>(1):300-15.<\/li>\n<li>W. Wimuttisuk, M. West, B. Davidge, K. Yu, A. Salomon, JD. Singer (2014). &#8220;<a href=\"http:\/\/www.biomedcentral.com\/1471-2121\/15\/28\" target=\"_blank\" rel=\"noopener noreferrer\">Novel Cul3 binding proteins function to remodel E3 ligase complexes.<\/a>&#8221;\u00a0<em>BMC Cell Biol<\/em>,\u00a0<strong>15<\/strong>:28.<\/li>\n<li>B. Feng, P. Jiao, Y. Helou, Y. Li, Q. He, MS. Walters, A. Salomon, H.Xu (2014). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24722245\" target=\"_blank\" rel=\"noopener noreferrer\">Mitogen-activated protein kinase phosphatase 3 (MKP-3)-deficient mice are resistant to diet-induced obesity.<\/a>&#8221;\u00a0<em>Diabetes<\/em>,\u00a0<strong>63<\/strong>(9):2924-34.<\/li>\n<\/ul>\n<h3 class=\"year\">2013<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>Y. Helou, V. Nguyen, S. Beik, A. Salomon (2013). &#8220;<a href=\"http:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0069641\" target=\"_blank\" rel=\"noopener noreferrer\">ERK positive feedback regulates a widespread network of tyrosine phosphorylation sites across canonical T cell signaling and actin cytoskeletal proteins in T cells.<\/a>&#8221;\u00a0<em>PLoS One<\/em>, <b>8<\/b>(7):e69641.<\/li>\n<li>B. DeNardo, M. Holloway, Q. Ji, K. Nguyen, Y. Cheng, M. Valentine, A. Salomon, R. Altura (2013). &#8220;<a href=\"http:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0082513\" target=\"_blank\" rel=\"noopener noreferrer\">Quantitative phosphoproteomic analysis indetifies activation of the RET and IGF-1R\/IR signaling pathways in neuroblastoma.<\/a>&#8221;\u00a0<em>PLoS One<\/em>,\u00a0<strong>8<\/strong>(12):e82513.<\/li>\n<li>T. Sanderson, G. Mahapatra, P. Pecina, Q. Ji, K. Yu, C. Sinkler, A. Varughese, R. Kumar, M. Bukowski, R. Tousignant, A. Salomon, M. Huttemann (2013). &#8220;<a href=\"http:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0078627\" target=\"_blank\" rel=\"noopener noreferrer\">Cytochrome C is tyrosine 97 phosphorylated by neuroprotective insulin treatment.<\/a>&#8221;\u00a0<em>PLoS One<\/em>,\u00a0<strong>8<\/strong>(11):e78627.<\/li>\n<li>Y. Li, Y. Nie, Y. Helou, G. Ding, B. Feng, G. Xu, A.Salomon, H. Xu (2013). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23520131\" target=\"_blank\" rel=\"noopener noreferrer\">Identification of sucrose non-fermenting related kinase (SNRK) as a suppressor of adipocyte inflammation.<\/a>&#8221;\u00a0<em>Diabetes<\/em>,\u00a0<strong>62<\/strong>(7):2396-409.<\/li>\n<\/ul>\n<h3 class=\"year\">2012<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>X. O&#8217;Brien, K. Heflin, L. Lavigne, K. Yu, M. Kim, A. Salomon, J. Reichner (2012). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22158618\" target=\"_blank\" rel=\"noopener noreferrer\">Lectin site ligation of CR3 induces conformational changes and signaling.<\/a>&#8221; <em>J. Biol. Chem.<\/em>\u00a0<strong>287<\/strong> (5):3337-48.<\/li>\n<li>G. Demirkan, A. Salomon, P. Gruppuso (2012). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22903715\" target=\"_blank\" rel=\"noopener noreferrer\">Phosphoproteomic analysis of liver homogenates.<\/a>&#8221;\u00a0<em>Methods Mol Biol.<\/em>,\u00a0<strong>909<\/strong>:151-63.<\/li>\n<li>L. Cao, Y. Ding, N. Hung, K. Yu, A. Ritz, B. Raphael, A. Salomon (2012). &#8220;<a href=\"http:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0046725\" target=\"_blank\" rel=\"noopener noreferrer\">Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells.<\/a>&#8221;\u00a0<em>PLoS One<\/em>, <b>7<\/b>(10):e46725.<\/li>\n<\/ul>\n<h3 class=\"year\">2011<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>G. Demirkan, K. Yu., J. Boylan, A. Salomon, P. Gruppusso (2011). &#8220;<a href=\"http:\/\/www.plosone.org\/article\/related\/info%3Adoi%2F10.1371%2Fjournal.pone.0021729\" target=\"_blank\" rel=\"noopener noreferrer\">Phosphoproteomic profiling of in vivo signaling in liver by the mammalian target of rapamycin complex 1 (mTORC1).<\/a>&#8221; <em>PLoS One<\/em>, <strong>6<\/strong>(6):e21729.<\/li>\n<\/ul>\n<h3 class=\"year\">2010<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>P. Agrawal, K. Yu, A. Salomon, J. Sedivy (2010). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21150319\" target=\"_blank\" rel=\"noopener noreferrer\">Proteomic profiling of Myc-associated proteins.<\/a>&#8221; <em>Cell Cycle<\/em>, <strong>9<\/strong>(24):4908-21.<\/li>\n<li>K. Yu, A. Salomon (2010). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20336676\" target=\"_blank\" rel=\"noopener noreferrer\">HTAPP: High-throughput autonomous proteomic pipeline.<\/a>&#8221; <em>Proteomics<\/em>, <strong>10,<\/strong> 2113-2122<strong>. (<a href=\"http:\/\/peptidedepot.com\/HTAPP.html\" target=\"_blank\" rel=\"noopener noreferrer\">Paper supplemental website<\/a>)<\/strong><\/li>\n<li>R. Jianu, K. Yu, L. Cao, V. Nguyen, A. Salomon, D. Laidlaw (2010). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC2872116\/\" target=\"_blank\" rel=\"noopener noreferrer\">Effective visual integration of quantitative proteomic data, pathways, and protein information.<\/a>&#8221; <em>Trans. on Vis. and Comp. Graphics, <\/em><strong>16<\/strong>, 609-620<strong>. (<a href=\"http:\/\/graphics.cs.brown.edu\/research\/sciviz\/proteins\/home.htm\" target=\"_blank\" rel=\"noopener noreferrer\">Paper supplemental website<\/a>)<\/strong><\/li>\n<\/ul>\n<h3 class=\"year\">2009<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>K. Yu, A. Salomon (2009). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19834895\" target=\"_blank\" rel=\"noopener noreferrer\">PeptideDepot: Flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information.<\/a>&#8221; <em>Proteomics, <\/em><strong>9<\/strong>(23), 5350-58<strong>. (<a href=\"http:\/\/peptidedepot.com\/PeptideDepot.html\" target=\"_blank\" rel=\"noopener noreferrer\">Paper supplemental website<\/a>)<\/strong><\/li>\n<li>V. Nguyen, L. Cao, J. T. Lin, N. Hung, A. Rit, K. Yu, R. Jianu, B.J. Raphael, S. Ulin, D.H. Laidlaw, L. Brossay, A. Salomon (2009). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19605366\" target=\"_blank\" rel=\"noopener noreferrer\">A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation.<\/a>&#8221; <em>Mol. Cell Prot<\/em>,<strong> 8<\/strong>:2418-31.<strong> (<a href=\"http:\/\/tcellpathway.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">Paper supplemental website<\/a>)<\/strong><\/li>\n<li>K. Yu, A. Sabelli, L. DeKeukelaere, R. Park, S. Sindi, CA. Gatsonis, A. Salomon (2009). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19526561\" target=\"_blank\" rel=\"noopener noreferrer\">Integrated platform for manual and high-throuput statistical validation of tadem mass spectra.<\/a>&#8221; <em>Proteomics<\/em>, <strong>9<\/strong>(11), 3115-25.<strong> (<a href=\"http:\/\/peptidedepot.com\/Spectral_Score.html\" target=\"_blank\" rel=\"noopener noreferrer\">Paper supplemental website<\/a>)<\/strong><\/li>\n<li>I. Lee, A. Salomon, K. Yu, L. Samavati, P. Pecina, A. Pecinova, M. Huttemann (2009). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19426869\" target=\"_blank\" rel=\"noopener noreferrer\">Isolation of regulatory-competent, phosphorylated cytochrome c oxidase<\/a>.&#8221; <em>Methods Enzymol.<\/em><strong> 457, <\/strong>193-210.<\/li>\n<li>J. Pezza, S. Langseth, R. Yamamoto, S. Dorris, S. Ulin, A. Salomon, T. Serio (2009). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19073888\" target=\"_blank\" rel=\"noopener noreferrer\">The NatA acetyltransferase couples Sup35 prion complexes to the [PSI+] phenotype.<\/a>&#8221; <em>Molec. Biol. Cell.<\/em><strong>20<\/strong>(3) 1068-80<\/li>\n<li>A. Ritz, G. Shakhnarovich, A. Salomon, B. Raphael (2009). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18996944\" target=\"_blank\" rel=\"noopener noreferrer\">Discovery of phosphorylation motif mixtures in phosphoproteomics data.<\/a>&#8221; <em>Bioinformatics<\/em>. <strong>25<\/strong> (1) 14-21.<\/li>\n<\/ul>\n<h3 class=\"year\">2008<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>H. Yu, I. Lee, A. Salomon, K. Yu, M. Huttmann (2008). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18471988\" target=\"_blank\" rel=\"noopener noreferrer\">Mammalian liver cytochrome c is tyrosine-48 phosphorylated in vivo, inhibiting mitochondrial respiration.<\/a>&#8221; <em>Biochim. Biophys. Acta.<\/em> <strong>1777<\/strong>(7-8) 1066-71.<\/li>\n<\/ul>\n<h3 class=\"year\">2007<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>L. Cao, K. Yu, C. Banh, V. Nguyen, A. Ritz, B. Raphael, Y. Kawakami, T. Kawakami, A. Salomon (2007). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17947660\" target=\"_blank\" rel=\"noopener noreferrer\">Quantitative Time-Resolved Phosphoproteomic Analysis of Mast Cell Signaling.<\/a>&#8221; <em>J. Immunology<\/em>. <strong>179<\/strong>(9) 5864-76. <strong> (<a href=\"http:\/\/mastcellpathway.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">Paper supplemental website<\/a>)<\/strong><\/li>\n<li>T. Nuhse, K. Yu, A. Salomon (2007). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18265394\" target=\"_blank\" rel=\"noopener noreferrer\">Isolation of Phosphopeptides by Immobilized Metal Ion Affinity Chromatography.<\/a>\u201d\u00a0 In Cur. Prot. Mol. Biol., (Ausubel et al., eds.) 18.13.1-18.13.23. John Wiley &amp; Sons, Hoboken, N.J.<\/li>\n<\/ul>\n<h3 class=\"year\">2006<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>L. Cao, K. Yu, A. Salomon (2006). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16802613\" target=\"_blank\" rel=\"noopener noreferrer\">Phosphoproteomic Analysis of Lymphocyte Signalling.<\/a>\u201d In Advances in Experimental Medicine and Biology, Vol. <strong>584<\/strong>, C. Tsoukas, ed. Springer, New York, NY. chapter 19, Pgs. 277-88.<\/li>\n<li>I. Lee, A. Salomon, K. Yu, J. Doan, L. Grossman, M. Huttemann (2006). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16866357\" target=\"_blank\" rel=\"noopener noreferrer\">New Prospects for an Old Enzyme: Mammalian Cytochrome c Is Tyrosine Phosphoryalted In Vivo.<\/a>\u201d <em>Biochemistry. <\/em><strong>45<\/strong>(30): 9121-9128.<\/li>\n<\/ul>\n<h3 class=\"year\">2005<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>S. Ficarro, A. Salomon, L. Brill, D. Mason, M. Stettler-Gill, A. Brock, E. Peters (2005). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15570572\" target=\"_blank\" rel=\"noopener noreferrer\">Automated immobilized metal affinity chromatography\/nano-LC electrospray ionization mass spectrometry platform for profiling protein phosphorylation sites.<\/a>\u201d <em>Rap. Comm. Mass Spec.<\/em> <strong>19<\/strong>:57-71.<\/li>\n<li>I. Lee, A. Salomon, S. Ficarro, I. Mathes, F. Lottspeich, L. Grossman, M. Huttemann (2005). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15557277\" target=\"_blank\" rel=\"noopener noreferrer\">cAMP-dependent tyrosine phosphorylation of subunit I inhibits cytochrome c oxidase activity.<\/a>\u201d <em>J. Biol. Chem.<\/em><strong>280<\/strong>:6094-6100.<\/li>\n<\/ul>\n<h3 class=\"year\">2004<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>L. Brill, A. Salomon, S. Ficarro, M. Mukherji, M. Stettler-Gill, E. Peters (2004). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15144186\" target=\"_blank\" rel=\"noopener noreferrer\">Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry.<\/a>\u201d <em>Anal. Chem.<\/em> <strong>76<\/strong>(10): 2763-2772.<\/li>\n<\/ul>\n<h3 class=\"year\">2003<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>A. Brock, D. Horn, E. Peters, C. Shaw,\u00a0 C. Ericson, Q. Phung, A. Salomon (2003). \u201c<a href=\"http:\/\/pubs.acs.org\/doi\/abs\/10.1021\/ac034215d\" target=\"_blank\" rel=\"noopener noreferrer\">An automated matrix-assisted laser desorption\/ionization quadrupole fourier transform ion cyclotron resonance mass spectrometer for \u2018bottom up\u2019 proteomics.<\/a>\u201d <em>Anal. Chem<\/em>. <strong>75<\/strong>(14):3419-3428.<\/li>\n<li>C. Ericson, Q. Phung, D. Horn, E. Peters, J. Fitchett, S. Ficarro, A. Salomon, L. Brill, A. Brock (2003). \u201c<a href=\"http:\/\/pubs.acs.org\/doi\/abs\/10.1021\/ac026409j\" target=\"_blank\" rel=\"noopener noreferrer\">An automated noncontact deposition interface for liquid chromatography matrix-assisted laser desorption\/ionization mass spectrometry.<\/a>\u201d <em>Anal. Chem.<\/em> <strong>75<\/strong>(10): 2309-2315.<\/li>\n<li>A. Salomon, S. Ficarro, L. Brill, A. Brinker, Q. Phung, C. Ericson, K. Sauer, D. Horn, P. Schultz, E. Peters (2003). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12522270\" target=\"_blank\" rel=\"noopener noreferrer\">Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry.<\/a>\u201d <em>Proc. Nat. Acad. Sci.<\/em>, <strong>100<\/strong>(2): 443-448.<\/li>\n<\/ul>\n<h3 class=\"year\">2002<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>A. Brock, D. Horn, C. Shaw, E. Peters, C. Ericson, Q. Phung, S. Ficarro, A. Salomon (2002). \u201cAutomated Liquid Chromatography MALDI FT-ICR MS Platform for Proteomics: Automated High Performance Mass Spectrometry and Data Analysis\u201d <em>Am. Pharma. Rev<\/em>., <strong>5<\/strong>(4): 94-99.<\/li>\n<li>E. Peters, A. Brock, Q. Phung, J. Fitchett, D. Horn, C. Ericson, S. Ficarro, A. Salomon (2002). \u201cAutomated Liquid Chromatography MALDI FT-ICR MS Platform for Proteomics: Rationale for an Off-Line Approach and Optimized Implementation\u201d <em>Am. Pharma. Rev.<\/em>, <strong>5<\/strong>(3): 72-81.<\/li>\n<li>E. Peters, A. Brock, D. Horn, Q. Phung, C. Ericson, A. Salomon, S. Ficarro, L. Brill (2002). \u201cAn automated LC-MALDI FT-ICR MS platform for high-throughput proteomics.\u201d <em>LCGC Europe<\/em>, <strong>15<\/strong>(7): 423-8.<\/li>\n<li>J. Pennington, H. Williams, A. Salomon, G. Sulikowski (2002). \u201c<a href=\"http:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/ol026829v\" target=\"_blank\" rel=\"noopener noreferrer\">Toward a stable apoptolidin derivative: Identification of isoapoptolidin and selective deglycosylation of apoptolidin.<\/a>\u201d <em>Organic Letters<\/em>, <strong>4<\/strong>(22): 3823-3825.<\/li>\n<\/ul>\n<h3 class=\"year\">2001<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>A. Salomon, Y. Zhang, H. Seto, C. Khosla (2001). &#8220;<a href=\"http:\/\/pubs.acs.org\/doi\/abs\/10.1021\/ol006767d\" target=\"_blank\" rel=\"noopener noreferrer\">Structure-activity relationships within a family of selectively cytotoxic macrolide natural products.<\/a>\u201d <em>Organic Letters<\/em>, <strong>3<\/strong>(1): 57-59.<\/li>\n<li>A. Salomon, D. Voehringer, L. Herzenberg, C. Khosla (2001). &#8220;<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11182320\" target=\"_blank\" rel=\"noopener noreferrer\">Apoptolidin, a selective cytotoxic agent, is an inhibitor of F0F1-ATPase.<\/a>&#8221; <em>Chemistry and Biology<\/em>, <strong>8<\/strong>(1): 71-80.<\/li>\n<\/ul>\n<h3 class=\"year\">2000<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>A.Salomon, D. Voehringer, L. Herzenberg, C. Khosla (2000). &#8220;<a href=\"http:\/\/www.pnas.org\/content\/97\/26\/14766.full.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">Understanding and exploiting the mechanistic basis for selectivity of polyketide inhibitors of F0F1-ATPase.<\/a>\u201d <em>Proc. Nat. Acad. Sci.,<\/em> <strong>97<\/strong>(26): 14766-71.<\/li>\n<li>H. Zeng, H. Shao, N. Menon, J. Yang, A. Salomon, R. Freidland, and M. Zagorski (2000). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11230876\" target=\"_blank\" rel=\"noopener noreferrer\">Nicotine and Amyloid Formation<\/a>\u201d <em>Biological Psychiatry<\/em> <strong>49<\/strong>(3): 248-257.<\/li>\n<\/ul>\n<h3 class=\"year\">1997<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>H. Shao, K. Marcinowski, E. Clancy, A. Salomon and M. Zagorski (1997). \u201cThe Solution Structures of the \u00df-Amyloid Peptide Provide a Molecular Approach for the Treatment of Alzheimer\u2019s Disease.\u201d In K. Iqbal, B. Winblad, T. Nishimura, M. Takeda and H. M. Wisniewski (eds), <em>Alzheimer\u2019s Disease: Biology, Diagnosis and Therapeutics<\/em> New York, John Wiley &amp; Sons, pp 729-739.<\/li>\n<\/ul>\n<h3 class=\"year\">1996<\/h3>\n<hr \/>\n<ul class=\"reverse\">\n<li>A. Salomon, K. Marcinowski, R. Friedland, and M. Zagorski (1996). \u201c<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8885836\" target=\"_blank\" rel=\"noopener noreferrer\">Nicotine inhibits amyloid formation by the beta-peptide.<\/a>\u201d <em>Biochemistry<\/em> <strong>35<\/strong>(42): 13568-78.<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>2026 A. Callahan, R. Puterbaugh, T. Ro, X. Zhang, X. Su, A. Salomon (2026). &#8220;Phosphoproteomic analysis of successive Jurkat CD19-CAR generations reveals TCR\u03b6-driven signalling&#8221;. Cellular Signalling, 138:112204. A. Callahan, S.S. Trychanh, T. Ro, A. Mojumdar, A.R. Salomon. (2026). \u201cPhosphotyrosine proteomics reveals novel Zap70 and Itk pathway targets downstream of TCR and CAR in Jurkat T&hellip; <a class=\"continue\" href=\"https:\/\/www.cellpathway.com\/?page_id=61\">Continue Reading<span> Publication<\/span><\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-61","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.cellpathway.com\/index.php?rest_route=\/wp\/v2\/pages\/61","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.cellpathway.com\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.cellpathway.com\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.cellpathway.com\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.cellpathway.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=61"}],"version-history":[{"count":125,"href":"https:\/\/www.cellpathway.com\/index.php?rest_route=\/wp\/v2\/pages\/61\/revisions"}],"predecessor-version":[{"id":909,"href":"https:\/\/www.cellpathway.com\/index.php?rest_route=\/wp\/v2\/pages\/61\/revisions\/909"}],"wp:attachment":[{"href":"https:\/\/www.cellpathway.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=61"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}